Cdo remapbil. If you have any suggestion to solve this problem.

Cdo remapbil I tried different . ncatted -O -a units,lon,c,c,"degrees_east" -a units,lat,c,c,"degrees_north" infile. Wait for the reply. nc and do the remapping: cdo -remapbil,target_grid. I'm trying to remap a variable from a latlon grid into another latlon grid, but I'm getting this error: I am looking for a procedure to apply bilinear interpolation to change the resolution of netCDF file (1. cdo -f nc -sellonlatbox,-44. nc out_bs_mask. I don't know where the problem exactly is. cdo -remapnn,EASE2_M36km. e module proj4 not loaded or other? My data are attached with the remapping script. nc tsice_as_ts. txt input. nc output_file. nc target_grid. nc LpTerra. grb oremap. If you have any suggestion to solve this problem. commands cdo remapbil (Abort): proj library support not compiled in! and I don't understand why, because I have proj 7. 9. nc Could give me any suggestion?-With a for loop I have problems but I run the commands manually they works-Should I keep my weight file in the same folder of the files that I won't to process? Thank you. Added by Trond Kristiansen almost 4 years ago. Conversion of Unit(to mm): cdo mulc,86400 input. 5. 68,-36. in this case all points within 5km of the coast, sea points are already "missing" in this file) and multiply. With the specification gridfile. 196001. gr,) you are telling CDO to remap your input file using a a bilinear interpolation based on a standard grid file (previous EN4_grid. I have set this grid using the data from the NISC. Only compute intensive CDO operators are parallelized. nc 1979-1984_cph. nc $ cdo setmisstoc: Processed 6609600 values from 1 variable over 1 timestep [0. txt RF_1901_2016. cdo remapbil,mywatershed. fr/orchidee/wiki/Documentation cdo remapbil,your_data. test. ipsl. nc] [output. Conversion from cdo remapbil (Abort): Too many arguments! Need 1 found 2. nc sst_data_bil. nc tmp. nc In my case there was additional issue that my variables did not have the grid information. f. 98783,72. I downloaded CMIP5 data from ECMWF that comes in Guassian coordinate for the entire globe. nc and I get: cdo(2) remapbil: 5%cdo(2) remapbil (Warning): Bilinear interpolation failed for some grid points - use a distance-weighted average instead! Hi Eduardo, You have to select the variable so before the remapping: cdo -remapbil,ll1deg_grid. 6. nc mygrid file is like following: gridtype =lonlat xsize =96 ysize=72 xfirst=0 xinc=3. grb aa. However, if you are converting to a coarser grid then it may be advisable to use a conservative remapping technique, otherwise you can miss points out during the remapping. nc file, cdo abort with the following message 'cdo (Abort): Unprocessed Input, could not process all Operators/Files'. nc') # read the file sds= ds_nc. g10. cdo("remapbil,r720x360","in. for regular grids, CDO can compute them internally. 12,42. nc File format : NetCDF -1 : Institut Source T Steptype Levels Num Points Num Dtype : Parameter ID 1 : unknown unknown c instant 1 1 136192 1 F32 : -1 Grid coordinates : 1 : projection : points=136192 (304x448) mapping : polar_stereographic x : -3837500 to 3737500 by 25000 m y : -5337500 thanks for your respond, but the command which has to executed must have to format like: (cdo remapbil,>targetgrid> <input> <output>) otherwise it doesn´t work. cdo remapbil,r144x73 ifile ofile with the error: cdo remapbil (Abort): Unsupported grid type: generic. then converted the merged file to netcdf using gdal_translate. nc out-file. Hello, I'm new to CDO and used it to remap/interpolate some variables including SST from a coarse domain to a finer one. An example netCDF file is attached represent 1 month of daily data for total precipitation. 对全球数据进行regrid 从ESGF网站下载的CMIP6数据是全球的，如果我们要对全球的数据进行regrid，使用cdo来操作非常简单，比如只需下面一行代码即可将数据regrid到1° x 1°的网格上: cdo remapbil,r360x180 sst_data. nc] To interpolate data onto T42 grid: cdo remapbil,t42grid [input. Users may request a specific number of OpenMP threads nthreads with the '-P' switch. nc The grid of your input data needs to be properly defined in your input file (that is often a problem). nc files: zmksrf_lai. Here are the out. cdo verifygrid: Grid no 4 (of 4) consists of 1440 points (type: generic) cdo verifygrid: Processed 5 variables [0. where targetgrid is a grid file and -f is output file type. nc then mask (e. nc. It comes from Climate Data Operator (CDO). cdo -maskregion,Arizona_lonlat. I was wondering if there is a cdo command that can remap this "generic" grid to a regular grid. After I compared CDO remapped file with the wrfinput from ARW feature "ndown. Hi! I have been trying to remap a data set by using remapbil. Hi Trevor, the coordinate variables lat and lon do not have a units attribute. In order to get the same size for obtaining the bias difference with EOBS and CRU dataset, I have done this but still it doesn't work. Im using cdo to regrid a dataset (attached) but I am having some problems. nc, and zmksrf_pft. nc remapbil. nc") (you can see how the command is built up without running it using the option "debug=True" in the call). txt osel. Doing steps 1 and 2 exactly like before but changing 35718x1 to 40320x1 worked: cdo selcode,172 ICMGGECE3INIT pdtmp. nc ocn_temp_modmiss. 97e+36)! Which, I suppose, is the result of attempting to remap a file presuming it is gridded using a different standard than the existing one. I have a Netcdf file that it is unevenly spaced in latitude. Calculations of seasonal mean (JJAS): cdo seasmean infile outfile. nc where inputs are are: CDO found 2 data variables, the first variable time_bnds has 2 points and no grid information. grd, wrfout_d01_2005-01 wrflowinp_d01_2005-01. nc fileout. nc $ cdo setmisstoc: Processed 20736 values from 1 variable over 1 timestep [0. nc fracout. uploaded are conservative (con), bilinera (bil) and distance weighted fields. there is a coordinates attribute Hi Uwe, I used the latest cdo/2. Contribute to AZed/cdo development by creating an account on GitHub. Now that I have a working netcdf file with good looking data that cdo can read Hi, I'm using cdo to regrid ERA5 data from regular grids to polar stereographic grids. 9 infile outfile. 6. So before all the above-mentioned steps, I had to add grid information attribute to all the variables (in my cases all the variables ended with _ave) using nco remapbil Bilinear interpolation Performs a bilinear interpolation on all input fields. 5 degree LAI file into 0. I have used this: cdo remapbil,NEW_GRID_DEF old-file. 5degree to 5min with cdo command remapbil but I get errors like: cdo remapbil,targetgrid tas_1990-2020. Grid Description File. CDO can handle the rotated data and remap it to e. 5°) ---> (1. nc RE: Remapbil with lat/lon binary files - Added by Sentia Goursaud over 4 years ago Wow thank you very much !!! With the first part of the code (cdo remapbil,EN4_grid. Can anyone to help me? I am trying to use this command to interpolate my netcdf data into my wrfinput_d01 . nc:N2 data-file. 51,7. François cdo remapbil,lon=1/lat=55 1979-1982_d. Probably I need a example file with a resolution cdo remapbil,r3000x500 test. cdo sinfo o. However, when I tried to use -eof or -remapbil on the same . Input file always needs to have the following day to the last day for which you want to compute daily sums/averages import xarray as xr ds_nc = xr. i tried to convert the CMIP5 data to regular lonlat data using the NetCDF file of my watershed using the following the CDO command. nc ocn_temp_obsmiss. CDO 必须能够解析您的命令。 Roughly speaking your command is "cdo remapinstruction infile outfile". CDO User’s Guide Climate Data Operators Version 1. Learn how to use CDO, a software for standard processing of climate and forecast model data, with GRIB, NetCDF and MPI-MET formats. nc As said, this is a little safer, a little more longwinded, but may mask some land data. nc OUTPUT_FILE. txt -eca_cdd -selyear,2031/2060 -mulc,2592000 -del29feb -sellonlatbox,0,90,0,90 ${i} It's not really visible in your post, but under that condition it catches my eye, that you do a remapping between two sellonlatbox calls. nc Warning (cdfScanVarAttributes) : NetCDF: Variable not found - areacello cdo remapbil: SCRIP bilinear remapping from curvilinear (320x384) to lonlat (360x180) grid, with source mask (86096) I use ' cdo remapbil,CDO_proj test2. nc It seems that CDO found more than one timestep. 1. Im using: cdo sellonlatbox,10. I am desperate, please can anyone help me? Thank you very very much really need help here. (1-3/3) cdo -copy file. I am using this command: cdo -O remapbil,grid_file_AQUA. Please attach your GRIB2 file for more help. nc aux. nc cdo remapbil,remap. nc result But the 1st generic grid has only one gridpoint and such a grid will cdo remapbil,r360x180 siconc_SImon_CESM2_historical_r1i1p1f1_gn_185001-201412. Thank you all so much for the prompt reply and detailed solution! The detailed process shared by Shreya helps me a lot and the solution from Karin works perfectly and Sorry pressed submit too soon there. Replies (2) 'Ia ora na, I've used a combination of CDO et NCO features to remap some wrfout file to wrfinput (see script below). txt file. nc result CDO can succeed by using the following commands, cdo remapbil,n32 in. nc new_file_ORAS. 5_2. nc masked_data. Lathière . It seems to me that the cdo remap command is not able to handle the "generic" grid of this file. nc then remap ICON data cdo remap,r360x180,weights. See grid files in this repo. nc cdo -remapbil,r8640x4320 LP. png: RE: Convert curvilinear to rectilinear grid - Added by Lina Teckentrup over The final output of this can be remapped to your heart's content. nc CMIP5_Regular. $ cdo remapbil,targetgrid ifile ofile $ cdo -f nc remapcon,r360x180 ifile. Edit: I have been reading some pages and I found a function called remapbil. text The grid data (gridfile. 5°x1. I want to know that in CDO, the meaning of the bilinear method, when we use this code I have a problem about remapping from a 0. Panoply, while remapcon aborts the operation. txt original/DJF_pr_hadgemhirham_76-05. 1x1 deg (r360x180) grid. Comparison on the cdo remapbil,remapbic,remapcon Added by Ping Yang almost 12 years ago. nc -gtc,5 remap_dist. The command should be cdo remapbil,infile1 infile2 ofile. nc out_1. This is my first time using linux & cdo for processing such data. Am I missing something in the processing? It would be great if any kind soul can help me with it. I want to interpolate the 0. I somehow have the impression that this is rather an NCO-command problem I'd be very grateful for any helpful hint! Thanks and with best regards, Iris. 68 -remapbil,griddescription. . to reproduce the figures shown). where infile1 is the target grid you want to map to and infile2 is the data you want to regrid. nc wgt. g. nc Warning (cdfScanVarAttributes) : NetCDF: Variable not found - areacello cdo remapbil: SCRIP bilinear remapping from curvilinear (320x384) to lonlat (360x180) grid, with source mask (86096) For example, one file has grid lon [-180, 180] and cdo accepts the following: sellonlatbox,50,-100 sellonlatbox,50,260 sellonlatbox,-150,260 sellonlatbox,260,-150 sellonlatbox,460,-150. 5 CDO grids The CDO grid description is an ASCII formatted file. nc TRMM_precip_daily. nc tas_1990-2020_5min. cdo remapbil (Abort): 'Ia ora na, I've used a combination of CDO et NCO features to remap some wrfout file to wrfinput (see script below). Thanks. Examples and descriptions are below. remapbil) on your files that should be converted. cdo remapbil,grid_descr bathy_bs-nrt_fullBox. nc and I get: cdo(2) remapbil: 5%cdo(2) remapbil (Warning): Bilinear interpolation failed for some grid points - use a distance-weighted average instead! cdo remapbil,gridfile. The results are really strange as I only have a partial answer shown in test_r. 2. txt infile outfile -Karin. In addiction, if I select one year before I also have one more problem: Warning (cdfSetDim) : Inconsistent dimension definition for lon! dimid = 0; type = 2; newtype = 1 cdo remapbil,outgrid1. You can use a gridfile to explicitly define output. nc 19810101_sic_nh. cdo remapbil: SCRIP bilinear weights from lonlat (1536x1152) to lonlat (480x241) grid, with source mask (1762142) cdo(2) selname: Processed cdo remapbil,gridfile. 9 December 2012 Uwe Schulzweida, Luis Kornblueh { MPI for Meteorology Ralf Quast { Brockmann Consult Hello, I am using this command above and I want to combine files which are 18 Gb each for each year. nc I need to remap the mid-pliocene land-sea mask to the n96 grid with 40320 cells. The “setgrid”-operator can also be used to Learn how to use cdo_genbil and cdo_remapbil modules for a bilinear remapping of fields between grids in spherical coordinates. nc -setgrid,ICON_grid_information. nc (importing CM SAF data, bilinear remapping to a predefined global grid with 1° resolution and conversion to netcdf). nc tsice_OImon_GFDL-ESM2M_historical_r1i1p1_200101-200512. but I receive this massage: [****Warning (cdf_scan_var_attr) : Time must be the first dimension! Unsupported array structure, skipped variable wetland_CH4_emissions! Warning (cdf_set_var) : Inconsistent variable definition for wetland_CH4_emissions! cdo remapbil (Abort): No remappable grid cdo -remapbil,r360x180 infile. nc:N1 -selname,FIELDS -setgrid,ingrid. open_dataset('name_of_your_file. txt 20150407. My next step was to generate a text file with the grid information of the AQUA/Modis file through the command: cdo griddes file_AQUA. cdo genbil,r360x180 ICON_grid_information. 3-gcc-11. nc new I want to regrid using remapbil, and I realise that there are several standard options for the grid available in cdo, such as global_1 for a 1x1 lon-lat grid. 1 and cdo 1. /gdes_n80_reduced LSM. nc out2. Thank you all so much for the prompt reply and # Correction to above python example to account for the time shift, as in the CDO example. Use the operator remap to apply this remapping weights to a data file with the same source grid. 4 but was not Warning (find_time_vars): Time variable >Time< not found! cdo remapbil (Abort): Unsupported generic coordinates (Variable: DN)! I suppose the root cause lies in WRF netCDF incompatibilities with CF Convention ; and I don't know if there's anything to do ? Thank you to enlighten me on that matter if you have any information. nc - Do the remapping cdo -remapbil,target_grid. Therefor i have different inputfiles and one fixed targetgrid in a different format, so the bash should do it for every single file in the directory. Here is an example to distribute the bilinear interpolation on 8 OpenMP threads: cdo -P 8 remapbil,targetgrid ifile ofile % cdo -P 8 info -remapcon,global_1 -selname,p01m StageIV_timestep. Now I want to regrid the netcdf file for specific lat lon and resolution. RE: remap a grid with laea projection - Added by Natalia L about 6 years ago Hi Karin, thank you. cdo remapbil,global_1 -selgrid,2 tos. nc out_1-deg. I saw that similar question has already been posted many times, and sorry for being repetitive, but I can't see the problem with my file. txt PERSIANN_2019-11-18044335am_2006. nc] IMO it sounds awkward to interpolate the area of each grid cell to another resolution, because it's wrong in the new grid. Such a variable can't be interpolated with CDO. so CDO assumed it to be regular lat-long grid. When doing a "ncdump -h" on the file, the description of the variable "rlat" is "latitude in rotated pole grid". nc lsmlgm_gg. 5 to 89. nc is as enclosed (zos_Omon_CNRM-CM6-1_abrupt-4xCO2_r5i1p1f2_gn_185009-185912. If I would do, I'd take conservative rempping. nc > grid_file_AQUA. nc #5 Add correct datetimes cdo remapbil,NEW_GRID_DEF old-file. timeless. txt) for the command "cdo remapbil,gridfile. nc ouput. nc I am trying to upscaling my ISIMIP daily data from 0. nc result. E. nc ncks -C -x -v Times outfile. 0172689 cdo -selname,variable prate_daily_198007. nc distance. txt. I don't know why the output is nan. You have to add it in your python script or with NCO's ncatted. This is the warning message: cdi warning (cgribexDefGrid): CGRIBEX library doesn't support generic grids, grid information will be lost! But the source file "aa. txt w2001bil. myfile. The second part is your input file that you want to regrid ( EN. You should also set missing values properly before interpolating. I took almost 8 hours to remap 1 year of hourly data (2d surface temperature) from original grid (0. There is a line of missing values in the out. See examples of operator A user asks how to use cdo remapbil to remap or remap grid of netcdf files with rotated pole coordinates to standard lon lat degrees. The output field from the above command has values up to ~1. This is done with the remapbil operator via: cdo remapbil,myGridDef INPUT_FILE. nc I can find missing values in org. nc > myGridDef myGridDef is a text file. cdo remapbil,global_1 -delname,percentile -setctomiss,-3000 -setmissval,-32768 -setgrid,global_0. Notably, remapbil outputs a working file that can be read using e. cdo sinfon outfile. 25 deg) to 1 deg. Projection information from the data: gridID 1. nc mask_N320. 83s 43MB]. This means most of the time is spend in reading and writing the data. mpg. I tried to do the regrid but it 本文简单介绍如何使用cdo对GCMs数据进行regrid。 1. nc 20150407_bil. For the other models, such as CESM2 ocean and EC Max-Planck-Institut für Meteorologie CDO’spythonbindings RalfMüller MPI Met Hamburg October17,2018 Ralf Müller (MPI Met Hamburg) CDO’s python bindings October 17, 20181/14 Ah - sorry, one last question - if I try to regrid a different input with identical variable/attribute names but different data with the same weights file, it looks like it then regenerates the weights file when running the remapping. 14 s 21 MB] $ cdo setmisstoc,-999 ocn_temp_mod. nc ESL_-31000b. nc -Karin. nc The in. A call like: cdo remapbil,oigrid. error: cdo remapbil (Abort): Open failed on r360*180! I am encountering an issue while using CDO to remap soil moisture data, and I would appreciate your assistance in resolving it. cdo(2) uv2dv: Process started cdo(3) remapbil: Process started cdo(4) seltimestep: Process started cdo(5) merge: Process started cdo(3) remapbil: Bilinear weights from lonlat (1440x721) to gaussian (1440x720) grid cdo(5) merge: Processed 2 variables over 30 timesteps. Where can I find a list of the available Simply referring to external software such as CDO is not enough and a concrete example should be given (e. maskout. exe", it appeared via NCVIEW that there's a horizontal shift (zonal & meridional) between both files ; also field values are very alike, but not exactly the same (as indicated by cdo -f nc remapbil,r8640x4320 vpd_mean. hdf output. the code are: cdo remapbil,mygrid soilcode. Another user replies with an example of target grid It sounds from the CDO documentation as if it ought to be possible to read the input grid information directly from the input file, but we haven't gotten this to work yet. nc'. grd, infile. The same is true for masking of missing values. 9k次，点赞4次，收藏17次。这篇博客介绍了如何处理文件分辨率过高导致文件过大的问题。通过使用ncdump检查文件分辨率，发现原文件分辨率为1440x721。采用cdo的remapbil命令，将文件插值为144x72的新分辨率，成功将文件大小减小到100多M，从而实现高效的数据压缩和管理。 cdo remapbil Warning (cdfScanVarAttributes) : Inconsistent data type for attribute time:valid_range, ignored! Added by Artie Yin about 7 years ago. nc new. 9375°). cdo griddes FILE_WITH_TARGET_GRID. e. An OpenMP-enabled C++ compiler is needed to use this feature. analysis. gridtype = projection gridsize = 13778944 With CDO, you will only be able to extrapolate the data over space, which is very different from what would be called a downscaling. In this case you need to select the variable sst for the interpolation: cdo remapbil,r360*360 -selname,sst HadISST_sst. cdo -f grb remapbil,N320 mask_F320. I have spatially merged 4 tif tiles using gdal_merge. nc I want to regrid using remapbil, and I realise that there are several standard options for the grid available in cdo, such as global_1 for a 1x1 lon-lat grid. This is the output from cdo grids:. cdo remapbil,r360x180 in. But I couldn't remap this "generic" grid to a lonlat. You can use cdo grid descriptions instead of a grid file if your grid is regular. the When applying "cdo griddes" on the provided file, I get two grid types: grid 1 generic and grid 2 is curvilinear. The other data variables do not make sense to remap to your target grid, I think (zonal mean, time-series without a grid). The solution that worked was "cdo remapbil,grid_example. nc tt1. nc -selname,your_variable TRMM_precip_daily. Replies (7) Dear cdo users. MPI CDO; To reset calendar (360-day and 365-day) so that the netCDF file can be read by Grads: cdo setcalendar,standard [input. Because you have a space where it shouldn't be, CDO is not able to parse the command properly. grb File format : GRIB2 -1 : Institut Source T Steptype Levels Num Points Num Dtype : Parameter name 1 : unknown unknown v instant 1 1 3366 1 P24 : lsm 2 : unknown unknown v instant 1 1 3366 1 P16 : orog 3 : unknown unknown v accum 1 1 3366 1 P24 : tp Grid coordinates cdo -remapbil,r360x180 infile. 32s 209MB]. text Please help me resolve this problem. nc" is attached here. 35,9. grib2 Unsupported file structure. nc File format : NetCDF -1 : Institut Source T Steptype Levels Num Points Num Dtype : Parameter name 1 : MPIMET ECHAM5. And it is still extremely slow. 01 s 14 MB] $ cdo remapbil, ocn_temp_modmiss. 7. nc","out. cdo remapbil,outgrid1. It fills the grid cells without data on the global grid with missing values and you can extract the EUR subset with the sellonlatbox operator. 1)". The ASCII file can then be used to mask the corresponding area with CDO's operator maskregion (only the data in this area is extracted, all others are set to missing value). , what it looks like when I plot the data regularly) - i. cdo -R -remapbil,r1600x800 -setgridtype,regular ifs_operod2_Tauto_2019051418+0_smi. 5. nc (47. nc [Fri 2017-03-31|10:45:12] cdo remapbil: Started child process "selname,ht org. 4. These operators are based on an adapted SCRIP The easiest way with cdo: create a grid description file of the target grid (with griddes from an existing target grid netCDF file) and apply an interpolation routine (e. exe", it appeared via NCVIEW that there's a horizontal shift (zonal & meridional) between both files ; also field values are very alike, but not exactly the same (as indicated by min/max). NARCLIM_CORDEX_pracc. cdo -f nc remapbil,r360x180 -import_cmsaf cmsaf_product. Ah - sorry, one last question - if I try to regrid a different input with identical variable/attribute names but different data with the same weights file, it looks like it then regenerates the weights file when running the remapping. cdo sinfon aux. I tried with cdo version 1. nc remap_vpd. cdo remapbil,target_grid. nc RE: cdo remapbil from polar_stereographic to lonlat grid, longitude shifted - Added by Ligang Chen over 2 years ago Now it works, thanks a lot. error: cdo remapbil (Abort): Open failed on r360*180! cdo remapbil (Abort): proj library support not compiled in! it means that your cdo is not built with proj support. There are more than 600 operators available. shift(time= $ cdo remapbil,ts_Amon_GFDL-ESM2M_historical_r1i1p1_200101-200512. nc infile. If the result is not correct or there is no grid information available cdo remapbil,CDO_proj ESL_-31000. interpolate data. nc, as it was only taking partially the data without interpolation as the remainder data are 'NaN'. See the result of sinfon. nc but I receive this massage: [****Warning (cdf_scan_var_attr) : Time must be the first dimension! Unsupported array structure, skipped variable wetland_CH4_emissions! Warning (cdf_set_var) : Inconsistent variable definition for wetland_CH4_emissions! cdo remapbil (Abort): No remappable grid found One further question came up from using the remapbil command: cdo(1) sethalo: Process started cdo remapbil (Warning): Using a non-thread-safe NetCDF4/HDF5 library in a multi-threaded environment may lead to erroneous results! cdo remapbil (Warning): Use a thread-safe NetCDF4/HDF5 library or the CDO option -L to avoid such errors. This happens often if the 'first' timestep has two records with the same parameter/level combination, that is not supported in CDO. nc of. grb cdo -f nc -t ecmwf setgrid,g40320x1 pdtmp. That library is a total deal. I attempted to remap the soil moisture data from 84. and consequently, both input and output files stays on the same grid: cdo remapbil,lon=1/lat=55 1979-1982_d. 5 degree. 65 to -59. png (176 KB) NARCLIM_CORDEX_pracc. cdo(4) seltimestep: Processed 2076480 values from 2 variables over 2 timesteps. So, I tried to edit the mask file with "ncatted". Usually that error is related with the compiler and not with cdo -remapbil,outgrid_crop_cerra. gridtype = lonlat I have two . nc Actually this happens to some CMIP6 models (here we are trying to remap CNRM-CM6-1 ocean results). nc #4 Delete uncorrectly formated datetimes in outfile. 585 -remapbil,r360x180 tas_EUR_19700101. nc infile outfile Both commands can be executed in a single call like (in a more general form): cdo remapbil,localgrid. Replies (5) RE: remapbil: Unsupported grid type: generic, ncatted - Added by Uwe Schulzweida over 13 years ago cdo-P 8 remapbil, targetgrid infile outfile. h5 -import_cmsaf cmsaf_instantaneous_product. nc cdo -remapbil,weight. nc if. The format of this file is NetCDF following the SCRIP convention. nc ofile. This is especially Hi, I have some issues using the remapbil command: cdo remapbil,mygrid3 units_pre_tas. nc (pipe1. 4 June 2014 Uwe Schulzweida { MPI for Meteorology cdo genbil: SCRIP bilinear weights from lonlat (1440x400) to lonlat (40x45) grid cdo genbil: Processed 576000 values from 2 variables over 1 timestep ( 0. But I am not sure what the <r1600x800> specification should be. Setting of missing value: cdo -setctomiss,-999. nc RE: Remap Error: Generic Coordinates not supported - Added by Yijun Yang almost 2 years ago Hi Shreya and Karin. Below is my CDO version information. txt seaice_conc_daily_nh_19810101_n07_v04r00. 5 degree netcdf files to a netcdf files in 3. nc new-file. The error is "cdo Can use command line and CDO to aggregate or resample entire NC files. txt -setgrid,nh_griddes. mpimet. 05 degree PFT file, so that I have high resolution LAI data. 59386,64. nc w2001bilinear. grib2 : Gridded binary (GRIB) version 2 $ RE: cdo remapbil (Abort): Unsupported target grid type (generic)! - Added by Ralf Mueller almost 7 years ago Unless you provide some reasonalbe coordinates to the ROMS data set there is nothing I can show you. test. 5 yinc=2. 粗略地说，您的命令是“cdo remapinstruction infile outfile”。 So spaces are critical for CDO understanding the command. nc bathy_bs-nrt_fullBox_remapped. txt out. nc remap_dist. Luyssaert Last revision: 2020/03/19, J. e36 - the missing value indicator which suggests that CDO is not correctly interpreting the misising data indicators in the original data. cdo mul your_data. grd) and then I used this command to remap/interpolate : cdo remapbil,d01. 0 on Levante. shift(time= I understand that remapbil provides the coordinates for the entire globe, so it is not a case of specifying the size of the original dataset with: cdo remapbil,r106x103 filein. I assume that we do a bilinear interpolation. cdo remapbil (Abort): Unsupported grid type: generic. If all netCDF files are in the same folder than do. nc -select,name=so -setgridarea,areacello. Extrapolation will only be made from statistical averages based # Correction to above python example to account for the time shift, as in the CDO example. 2 v instant 17 1 64800 1 F32 : t Grid coordinates : 1 : lonlat : points=64800 (360x180) lon : 0 to 359 by 1 degrees_east circular lat : -89. If you work with CM SAF data on original satellite project, an additional file with information on geolocation (latitudes and longitudes of the satellite When I try to use remapbil this reported : cdo remapbil (Abort): Bilinear/bicubic interpolation doesn't support unstructured source grids! And when I use your recommendation the message is : cdo remapcon: SCRIP first order conservative weights from unstructured (104431) to lonlat (180x91) grid cdo remapcon: Target grid area error: 1345 -0. txt trmm_3B42_v7_19980102. nc weights. I tried CDO, and also ncrem To regrid a netCDF file using CDO you will have to use the argument remapbil, which is the stands for bilinear interpolation (there are other methods but this is the most conservative approach). nc #3 Renamme variable ncrename -d Times,Time outfile. nc file and different systems (cygwin on windows and linux on cdo remapbil,r360x180 siconc_SImon_CESM2_historical_r1i1p1f1_gn_185001-201412. 964x406_grid. nc File format : NetCDF2 -1 : Institut Source T Steptype Levels Num Points Num Dtype : Parameter name 1 cdo -remapbil,mygrid. grb cdo sinfon oremap. Roughly speaking your command is "cdo remapinstruction infile outfile". Now moving to your case. 5 cdo remapbil: Bilinear weights from gaussian_reduced (542080) to lonlat (1440x720) grid cdo remapbil (Abort): Can't do bilinear interpolation when source grid rank != 2. nc frac. nc I got this error: remapbil (Abort): Unsupported target grid type (generic)! I guess cdo does not handle with generic type. nc ocn_temp cdo remapbil,r3000x500 test. I am further attaching the output of what the data should look like with no interpolation (i. An incomplete list of When I try to use remapbil this reported : cdo remapbil (Abort): Bilinear/bicubic interpolation doesn't support unstructured source grids! And when I use your recommendation the message is : cdo remapcon: SCRIP first order conservative weights from unstructured (104431) to lonlat (180x91) grid cdo remapcon: Target grid area error: 1345 -0. nc cdo remapbil,gridfile. Could you provide us a formal guide? Hi, I'm using cdo to regrid ERA5 data from regular grids to polar stereographic grids. grb bb. 75*2. For the other models, such as CESM2 ocean and EC cdo remapbil, griddes. grib but CDO treats the destination grid as a full Gaussian grid: cdo remapbil: Bilinear weights from gaussian (1280x640) to gaussian (1280x640) grid cdo remapbil: Processed 1 variable over 1 timestep [0. de/projects/cdo. nc 注：这一步必须将原始数据和边界文件同时进行remap，否则会报错： Climate Data Operators + Packaging branches. nc] To interpolate data onto 1degx1deg grid: cdo remapbil,r360x180 [input. nc). % cdo -griddes -topo,t62grid # # gridID 1 # gridtype = gaussian gridsize = 18048 xsize = 192 ysize = 94 xname = lon xlongname = "longitude" xunits = "degrees_east" yname = lat Hello everyone, I have a problem with CDO remapping for which I haven't managed to find a solution. So is it normal for 'lonlat' coordinates type to be 'degrees_east circular' or should they just be 'degrees_east'? Hi all! I got this message: cdo remapbil: Open failed on >file. nc: Test file NorESM2-LM: RE: CMIP6 remapbil - Added by Ralf Mueller almost 4 years ago cdo remapbil,r720x360 input. cdo remapbil (Abort): Unsupported generic coordinates (Variable: nav_lon)! PLease can anmyone give me a help? Replies (2) RE: remapbil Unsupported target grid - Added by Karin Meier-Fleischer over 3 years ago cdo remapbil,r360x180 in. When I run "file" on the faulty file, I can confirm this is a bonefide grib2: $ file myfile. nc cdo sinfon infile_r360x180. nc $ cdo setmisstoc,-999 ocn_temp_obs. Unfortuneately, I endup with You use the select operator which keeps the extracted variable from multiple input files and pipe this stream to the remap operator. 96438,21. mask. I thought that 'remapbil' was interpolating my current dataset into the defined projection? CMIP6 remapbil. The errors are cdo remapbil (Abort): Unsupported grid type: generic. nc CMIP5_Gaussian. but it cannot succeed by using latitude and longitude interpolation. So spaces are critical for CDO understanding the command. grb. cdo remapbil,NEW_GRID_DEF old-file. Well, I have the file land_use. 6/max=9. where I am attaching the image from out2. csv -remapbil,r720x360 CDO found 2 data variables, the first variable time_bnds has 2 points and no grid information. cdo -O -mergetime *. remapbil like all other interpolation cdo -remapbil,r360x180 time1. nc can not be worked out. nc File format: netCDF -1 : Institut Source Ttype Levels Hi Giorgio! PSL is the only variable with a horizontal grid. Supported data formats are GRIB 1/2, netCDF 3/4, SERVICE, EXTRA and IEG. the output from test. 08s ) $ cdo genbil,gridfile. CDO Syntax works like this: cdo -[function] input_file output_file; To regrid the file using bilinear interpolation in the terminal type: CDO can succeed by using the following commands, cdo remapbil,n32 in. Many CDO operators are I/O-bound. Has anyone done a comparison on the regriding methods in CDO, or Is there a reference for those interpolation methods? I want to know the exactly difference between those methods, suggestion/comments will be appreciated. I did a dedicated grid-description files (using cdo griddes infile > d01. nc I am trying remap interpolation using cdo by: cdo remapbil,black_sea. This page is helpful for describing regridding: cdo -f nc remapbil,r720x360 -setgrid,cmsaf_latlon_file. nc Some of the CDO operators are shared memory parallelized with OpenMP. The target grid mygrid3 is given by. 75 yfirst=-89. CDO homepage: https://code. RE: another "remapbil (Abort): Unsupported generic coordinates" question - Added by Noam Chomsky almost 5 years ago That worked Karin, thank you! I have learned something. grib2. RE: Unsupported file structure - Dear cdo users. I did not find the detailed documentation in the manual. I would like to use this text grid file information to regridding a NetCDF file (from ORAS5). f cdo remapbil: Open failed on >sref_2t. That error is because the dimensions do not agree. I have got this error: cdo remapbil (Abort): proj4 support not compiled in! What is the meaning of such error, i. 4. nc cdo remapbil (Abort): Unsupported projection coordinates (Variable: tas)! I check the grid information of my data with cdo griddes myfile. jussieu. 6 MB) test. nc Otherwise CDO tries to remap also all other variables, and this is not possible for the variables sigma_bnds and zlev_bnds. grb" is on a regular Gaussian grid. 83,40. 083333333333 flipped_month000001. 99 -remapbil,2. nc Warning (cdfScanVarAttributes) : NetCDF: Variable not found - areacella Warning (find_time_vars) : Found more than one time variable, skipped variable average_T1! CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data. grb lsm_gg. nc I guess, the cdo remapbil,. nc ) and your new regrided file (or output file = EN. And when I run a bilinear interpolation, I get this error: cdo remapbil (Abort): Bilinear/bicubic interpolation doesn't support unstructured source grids cdo outputtab,date,value -fldmean -sellonlatbox,37. 96,-9. 25°x0. nc cdo(2) remapcon: Process started cdo(3) selname: Process started -1 : Date Time Level Gridsize Miss : Minimum Mean Maximum : Parameter ID cdo(2) remapcon (Abort): Source grid Hi Akhilesh, you don't need to use a for loop. nc djf-hadgem-remapbil. You can use the CDO operator sinfo or griddes to check the grid information of the source grid. nc But the cdo still met some problem and the out. nc Is it correct? If not then upload the grid. error: cdo remapbil (Abort): Open failed on r360*180! You should add the coordinates attribute to use the existing geographic coordinates lon and lat for the interpolation: ncatted -a coordinates,pr,c,c,"lon lat" filename. txt file_ORAS. nc cdo genbil: SCRIP bilinear weights from lonlat (1440x400) to lonlat (40x45) grid, with source mask (575319) cdo remapbil,gridfile. How is this done? cdo remapbil, r288x145 –intlevel,100000,925000,85000,70000,60000, 50000,40000,30000,25000,20000,15000,10000,7000,5000 input. nc test_r. txt piomas1979_with_attributes. nc cdo remapbil: Bilinear weights from lonlat (135x129) to lonlat (68x65) grid, with source mask (4964) cdo remapbil: Processed 1 variable over 42369 timesteps [5. nc outfile. nc cdo -mulc,86400 -sellonlatbox,85,89,25,21 -remapbil,r1440x720 tmp. nc I have interpolated my wind speed data with the bilinear method in CDO and gdal but the output NetCDF of these 2 was totally different. nc Unsupported file type (library support not compiled in) When trying to do this (happens also if I just try to check a file with sinfo): CDO User’s Guide Climate Data Operators Version 1. Is there a simple way to preprocess the input file to adjust the rank of the source grid? I have attached an example grib file with one field. The problem now is that my example file has a high resolution and the file I'm trying to convert changed from 500 MB to 31 GB. nc output. What do I lack to install? cdo remapbil,r360*180 in. nc - If this fails try to select a variable from TRMM_precip_daily. cdo remapbil,gridfile. Hi Ibrahim, I can tell why you are having that error. gr). 9 using the following CDO command: cdo remapbil,SMAP_0. It is a common grid description for all available grids. nc and it returns: # 1. nc TRMM_precip_daily_remapped. But unfortunately it doesn´t Author: J. gridtype = projection gridsize = 544768 xsize = 608 I have a NetCDF file of regular lonlat coordinate for my watershed. nc". Documentation; FAQ; Downloads; Community; Please register yourself for reporting bugs or postings cdo remapbil,target. Tool using python and cdo to apply daily climate downscaling with BCSD. I recommend you to install cdo via anaconda -never let you down. -Karin. cdo remapbil,targetgrid ifile ofile Before the interpolation you should check whether CDO reads the source grid correctly. 0172689 cdo remapbil (Warning): Source grid cell center latitudes out of range (min=29. nc which is a grid in Lambert Azimuthal Equal Area (LAEA) projection. lats. here is a plot of your data % cdo remapbil,r480x241 -selname,ht org. nc out. 文章浏览阅读4. nc CDO has to be able to parse your command. 03s 25MB]. cdo -f nc remapbil,r360X180 seaice_conc_monthly_sh_197811_202212_v04r00. genbil Generate bilinear interpolation weights Generates bilinear interpolation weights for the first input field and writes the result to a file. cdo remapbil (Abort): Unsupported projection coordinates (Variable: precip)! What is the issue? I have attached the sample file of the data. nc infile_r360x180. Barichivich & S. Similar to Ferret (see also https://forge. The above command with the "cat" operator concatenates the input files into one where the climatology is indeed correct but the dimension is huge/equal to the total of input files. nc CDO can succeed by using the following commands, cdo remapbil,n32 in. nc result cdo remapbil,your_data. 8 installed so I don't know what's happening. - GitHub - tjvandal/bcsd-python: Tool using python and cdo to apply daily climate downscaling with BCSD. The following keywords can be used to describe a grid: gridtype STRING type of the grid (gaussian, lonlat, curvilinear, cell) gridsize INTEGER size of the grid xsize INTEGER size in x direction (number of longitudes) To get more information about the grid you can use the sinfo operator. zrtzy syj klwnfg syysk nol lle wzbaj tprzqnb dxuhwh walipln